San Francisco, 19-20 April 2013

"The Truth of Personalized Medicine: Our Commons Future"

2010 Congress Presentations

Re-live the Congress:
1) PDF copies of most presentations can be downloaded by clicking on the title links below.
2) Fora.tv streaming video is available by clicking on the ‘Watch Video’ links.
3) Video files can also be downloaded by clicking on the ‘Download’ link.  These (large!) files can be viewed in most web browsers or with free Flash Player software.
The full Commons Congress program is available on the Program page.

Keynote Speakers

Presentation

Stephen Friend,
Sage Bionetworks
Purpose of Congress

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Jeff Hammerbacher,
Cloudera
Moving from Narrative to Design with Open Source and Open Data

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John Wilbanks,
Creative Commons
How to Build a Digital Commons
Anne Wojcicki,
23andMe
Consumers, Genomes, & Research

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Special Guest Speaker

Presentation

Josh Sommer,
Chordoma Foundation
Just cure my disease, please

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Project Group Reports

Presentation

A) End to end Pilot
A. Kasarskis, I. Kupershmidt
Friday Summary Presentation
Saturday Synthesis Report
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B) Standards and Ontologies
Jesse Tannebaum
Friday Summary Presentation
Saturday Synthesis Report

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C) Infrastructure Tools
C. Goble, T. Liefeld, A. Pico
Friday Summary Presentation
Saturday Synthesis Report

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D) Internationalization
Rossini, Wilbanks, Goulding
Friday Summary Presentation
Saturday Synthesis Report

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E) Citation of Models
Liz Lyon
Friday Summary Presentation
Saturday Synthesis Report

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F) Public Engagement
C. Geoghegan, R. Tufel
Saturday Synthesis Report
Saturday Synthesis Reports All Workstreams

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Plenary Vignettes

Presentation

Andrea Califano,
Columbia University
Reconstruction and interrogation of a high-grade regulatory network reveals synergistic master regulators of disease subtypes
Lee Hood,
Institute for Systems Biology
Network Analysis for Prion Disease in Mice: Implications for Mechanism, Diagnosis and Therapy

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Trey Ideker,
UCSD
Biomarkers as networks, not individual loci
Hiroaki Kitano,
Systems Biology Institute
SBI software platform for systems biology

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Sam Aparicio,
University of British Columbia
MolEcular Taxonomy of BReast cancer International Consortium (METABRIC)

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Robert Epstein,
Medco
How a Healthcare Company Can Accelerate Translation of Scientific Knowledge to Practice

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Brian Yandell,
University of Wisconsin
Computational Infrastructure Platform for Systems Genetics Analysis
Jill Mesirov,
Broad Institute
Integrative, Bayesian Patient Stratification for Medulloblastoma
Eric Schadt,
Sage/Pacific Biosciences
Schadt Theory of Networks and Disease in 10 Minutes or Less
Vamsi Mootha,
Harvard
Targeting the mitochondrial basis of human disease
Atul Butte,
Stanford
Translating publicly-available molecular data into diagnostics, therapeutics, and novel insights into disease
Daphne Koller,
Stanford University
Gene Networks: Bridging Genetics and Phenotype
Geoff Ginsburg,
Duke University
Host Molecular Profiles for Detection and Diagnosis of Infectious Disease

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Ken Buetow,
NIH
caBIG: Building a cancer e-ecosystem
Garry Nolan,
Stanford
Mechanism, Therapy & Insights from the Single Cell
Laura Esserman,
UCSF

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Yoshihiden Hayashizaki,
Riken
Promoter Profiling Driven Analysis of Transcriptional Regulatory Network

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Sharon Terry,
Genetic Alliance
Openness as Process and Product

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John Wilbanks, Eric Schadt &
Stephen Friend
Conference Summary

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